Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_4223694_4229993_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

5UTR

Intron Coordinates:

4223694 - 4229993

Intron Length:

6300

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TGG|GTGAGTGCG

5'SS Class:

strong_major

3'SS Sequence:

ATTTTCCTTGTAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TCTTTAT

U12 Branch Point Sequence:

TGATCTTTATTT

Flanking Amino Acid:

5UTR

Intron Amino Acid Position:

5UTR

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

80.1

0.71

65.8

40.2

Major BPS

83.9

0.84

73.9

41.3

Major PPT

83.4

0.75

0.7

78.5

29.5

Minor 5ss

27.1

-2.6

2.9

24.3

36.8

Minor BPS

64.5

0.53

1.6

77.38

39.4

Associated Gene:

Gene:

TANGO2

Ensembl Gene ID:

ENSAPLG00000003711

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000003824

4207236 - 4230142

22907