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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_4339162_4409718_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4339162 - 4409718
Intron Length:
70557

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACAGCC
5'SS Class:
major
3'SS Sequence:
CCTGTTTCTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTATTATTATTT
Flanking Amino Acid:
ATAWQQLVLQEQSPSNQTSI
Intron Amino Acid Position:
73

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.5
0.63
1.1
66.9
37.4
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
78.7
0.65
0.8
77
31.8
Minor 5ss
37.2
-1.4
3.4
51.6
45.1
Minor BPS
56.7
0.29
1.8
77.56
39

Associated Gene:

Gene:
ARVCF
Ensembl Gene ID:
ENSAPLG00000002841
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002946
4338946 - 4495493
156548