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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_44116_44702_R

Intron Information:

Intron Rank:
26
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
44116 - 44702
Intron Length:
587

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGT|GTAAGTGTC
5'SS Class:
major
3'SS Sequence:
TCTTTTGTTCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTAAT
U12 Branch Point Sequence:
AGCCATCTAATC
Flanking Amino Acid:
LLAAWKKNPKYLLAAYRQWL
Intron Amino Acid Position:
1119

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.4
0.6
1.1
72.6
37.3
Major BPS
85.7
0.89
0.8
84
22.2
Major PPT
83.4
0.75
0.8
76.9
37.3
Minor 5ss
39.2
-1.2
3.4
53.4
43.8
Minor BPS
43.8
-0.4
1.7
48.7
34.7

Associated Gene:

Gene:
DHX37
Ensembl Gene ID:
ENSAPLG00000009562
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010012
43730 - 60314
16585