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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_4420202_4427860_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
4420202 - 4427860
Intron Length:
7659

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAATTC
5'SS Class:
strong_major
3'SS Sequence:
TTGCTTTTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGGGAC
U12 Branch Point Sequence:
TTGCTTTTTACA
Flanking Amino Acid:
VSERGRPHKGRGYDDPIETE
Intron Amino Acid Position:
328

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.4
0.79
0.9
78.4
30.1
Major BPS
48.6
-0
1.5
48.8
46.3
Major PPT
88.3
0.86
0.7
83.5
31.6
Minor 5ss
41.9
-0.9
3.2
59
45.7
Minor BPS
56.5
0.2
1.6
67.8
38.6

Associated Gene:

Gene:
ARVCF
Ensembl Gene ID:
ENSAPLG00000002841
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002946
4338946 - 4495493
156548