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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_4428361_4436742_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4428361 - 4436742
Intron Length:
8382

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTCAGTGTC
5'SS Class:
strong_major
3'SS Sequence:
GTTTCTCCTGAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATTAT
U12 Branch Point Sequence:
ATTTGTTTAATT
Flanking Amino Acid:
NDMEVRELITGTLWNLSSYE
Intron Amino Acid Position:
495

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.76
1.2
80.7
33.6
Major BPS
76.9
0.67
1
66.3
40.4
Major PPT
72.2
0.5
1
72.5
32.6
Minor 5ss
32.7
-2
3.2
43.9
43.8
Minor BPS
70.3
0.72
1.7
85.82
34.8

Associated Gene:

Gene:
ARVCF
Ensembl Gene ID:
ENSAPLG00000002841
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002946
4338946 - 4495493
156548