Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_4436927_4449662_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

4436927 - 4449662

Intron Length:

12736

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ACG|GTAAGGCAG

5'SS Class:

major

3'SS Sequence:

TCTCTTCTATTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTATAT

U12 Branch Point Sequence:

TTTTCTTTTATA

Flanking Amino Acid:

TVFKNTSGCLRNVSSDGAEA

Intron Amino Acid Position:

556

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

78.1

0.66

1.1

60.8

45.3

Major BPS

79.2

0.73

75.3

39.4

Major PPT

77.6

0.62

0.8

78.3

28.9

Minor 5ss

30.6

-2.2

3.3

39.3

Minor BPS

72.9

0.71

1.5

82.82

31.5

Associated Gene:

Gene:

ARVCF

Ensembl Gene ID:

ENSAPLG00000002841

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000002946

4338946 - 4495493

156548