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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_4449781_4451064_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4449781 - 4451064
Intron Length:
1284

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAACTTG
5'SS Class:
major
3'SS Sequence:
TTTTTTGTTACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTAAT
U12 Branch Point Sequence:
TGTAATGTAATT
Flanking Amino Acid:
AVGKKDTDNKSVENCVCIMR
Intron Amino Acid Position:
596

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.2
0.62
1
68.2
39.6
Major BPS
84.4
0.85
1.1
84
34.5
Major PPT
92
0.94
0.7
87.5
30
Minor 5ss
41.4
-1
3.1
55
49.2
Minor BPS
47.6
-0.1
2.1
70.21
41

Associated Gene:

Gene:
ARVCF
Ensembl Gene ID:
ENSAPLG00000002841
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002946
4338946 - 4495493
156548