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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_44801_45635_R

Intron Information:

Intron Rank:
25
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
44801 - 45635
Intron Length:
835

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTTGT
5'SS Class:
strong_major
3'SS Sequence:
TGGACGCATTTAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTTATTTTATTT
Flanking Amino Acid:
SPLIMLKTWSKLQPRTEALL
Intron Amino Acid Position:
1086

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.3
0.86
0.9
81.6
33.2
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
56.3
0.14
1
51.9
42.9
Minor 5ss
43.6
-0.7
2.9
58.5
40.3
Minor BPS
61.8
0.45
1.6
79.69
37

Associated Gene:

Gene:
DHX37
Ensembl Gene ID:
ENSAPLG00000009562
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010012
43730 - 60314
16585