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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_4482819_4483787_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4482819 - 4483787
Intron Length:
969

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTGAGTGCA
5'SS Class:
strong_major
3'SS Sequence:
GTGTTCTGATCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACAATAC
U12 Branch Point Sequence:
GTGTTCTGATCA
Flanking Amino Acid:
LQNLSAGNWTWSTYIRATVR
Intron Amino Acid Position:
718

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.75
0.9
71.5
33.9
Major BPS
44.6
-0.3
1
35
29.6
Major PPT
67.5
0.39
1.1
66.8
43.9
Minor 5ss
28
-2.5
3
33.3
41.7
Minor BPS
52.8
0.08
1.7
64.61
41.7

Associated Gene:

Gene:
ARVCF
Ensembl Gene ID:
ENSAPLG00000002841
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002946
4338946 - 4495493
156548