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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_4483939_4485301_F

Intron Information:

Intron Rank:
10
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
4483939 - 4485301
Intron Length:
1363

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTATCTTCT
5'SS Class:
weak_major
3'SS Sequence:
TCCCCTTATCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGATTAT
U12 Branch Point Sequence:
TTCCCCTTATCT
Flanking Amino Acid:
SMDRRNKDLIGSYAMGELVR
Intron Amino Acid Position:
768

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.6
0.6
1.1
74.1
37.2
Major BPS
69.6
0.49
1.2
60.1
46.3
Major PPT
72.2
0.5
0.8
65.4
35.2
Minor 5ss
65.7
0.53
1.9
77.2
37.8
Minor BPS
71.2
0.74
1.6
85.49
40.8

Associated Gene:

Gene:
ARVCF
Ensembl Gene ID:
ENSAPLG00000002841
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002946
4338946 - 4495493
156548