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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_4485495_4486585_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
4485495 - 4486585
Intron Length:
1091

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTGAC
5'SS Class:
strong_major
3'SS Sequence:
TTTTGCAAATCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAT
U12 Branch Point Sequence:
TGATATTTGACA
Flanking Amino Acid:
IQKLVAISKSSQSPRETKAA
Intron Amino Acid Position:
832

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
95.8
1.08
0.7
84.9
25
Major BPS
94.5
1.11
0.6
92.2
14.6
Major PPT
69.8
0.45
1
68.8
41
Minor 5ss
33
-1.9
3.2
42.9
44.7
Minor BPS
61.1
0.34
1.5
68.91
36.9

Associated Gene:

Gene:
ARVCF
Ensembl Gene ID:
ENSAPLG00000002841
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002946
4338946 - 4495493
156548