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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_4492820_4495391_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4492820 - 4495391
Intron Length:
2572

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTGAGATTC
5'SS Class:
major
3'SS Sequence:
CCCTGTGCTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTAAC
U12 Branch Point Sequence:
TTGCCTTTAACT
Flanking Amino Acid:
GDASEKEPLKNDTNRKNINR
Intron Amino Acid Position:
949

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.3
0.67
0.9
74.8
29.2
Major BPS
77.3
0.68
1
79.3
29.4
Major PPT
71.2
0.48
0.9
64.3
36.7
Minor 5ss
38.8
-1.3
3.2
51
39.9
Minor BPS
80.3
1.03
1.1
89.35
35.1

Associated Gene:

Gene:
ARVCF
Ensembl Gene ID:
ENSAPLG00000002841
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002946
4338946 - 4495493
156548