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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_4511872_4513689_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4511872 - 4513689
Intron Length:
1818

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATTGCA
5'SS Class:
strong_major
3'SS Sequence:
TTCATTTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTAAGTTAACC
Flanking Amino Acid:
EWAMNVGNEKGLILDKTVEE
Intron Amino Acid Position:
99

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.3
0.83
0.9
77
31.5
Major BPS
100
1.24
0.5
100
0
Major PPT
89.4
0.89
0.7
88
29.2
Minor 5ss
33
-1.9
3.1
42.1
44.5
Minor BPS
57
0.2
2.3
76.35
39.5

Associated Gene:

Gene:
COMT
Ensembl Gene ID:
ENSAPLG00000002789
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002828
4507135 - 4522585
15451