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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_4513973_4522573_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4513973 - 4522573
Intron Length:
8601

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAGGCAAT
5'SS Class:
major
3'SS Sequence:
TCTTTCCTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACCTTAA
U12 Branch Point Sequence:
GCCACCTTAACT
Flanking Amino Acid:
MGSLMLESSSVPLF
Intron Amino Acid Position:
5

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.3
0.57
1.1
70.6
41.3
Major BPS
60.9
0.27
1
51.6
35
Major PPT
88.9
0.88
0.7
81.1
31
Minor 5ss
39.8
-1.1
3.2
53.5
45
Minor BPS
72.2
0.78
1.4
77.46
44.6

Associated Gene:

Gene:
COMT
Ensembl Gene ID:
ENSAPLG00000002789
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002828
4507135 - 4522585
15451