Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_4533685_4534393_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

4533685 - 4534393

Intron Length:

709

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTCAGCATA

5'SS Class:

major

3'SS Sequence:

TTTTTGTTTAAAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CTCTAAG

U12 Branch Point Sequence:

TTTTGTTTAAAG

Flanking Amino Acid:

GSGGLACAKEAAQFGRKVAV

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

77.3

0.64

1.3

38.6

Major BPS

58.2

0.2

1.5

67.3

37.8

Major PPT

80.9

0.7

82.2

33.3

Minor 5ss

38.4

-1.3

2.9

49.1

46.7

Minor BPS

62.6

0.26

1.9

72.3

40.7

Associated Gene:

Gene:

TXNRD2

Ensembl Gene ID:

ENSAPLG00000002411

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000017269

4532425 - 4566194

33770

ENSAPLT00000002443

4532425 - 4573376

40952