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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_4536494_4537051_F

Intron Information:

Intron Rank:
6
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
4536494 - 4537051
Intron Length:
558

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGCTGC
5'SS Class:
strong_major
3'SS Sequence:
ATGCCTTTTTGAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
GCATTTTTAATG
Flanking Amino Acid:
IRGLTKGGKEGNYIMLLVNI
Intron Amino Acid Position:
167

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84
0.8
0.9
69.2
38.5
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
58
0.18
1.7
69.5
41
Minor 5ss
38.8
-1.3
3
50.2
46.4
Minor BPS
60
0.18
1.3
55.88
40.3

Associated Gene:

Gene:
TXNRD2
Ensembl Gene ID:
ENSAPLG00000002411
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002443
4532425 - 4573376
40952