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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_4536494_4537533_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4536494 - 4537533
Intron Length:
1040

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGCTGC
5'SS Class:
strong_major
3'SS Sequence:
TTTTTGTTTGTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATATCAA
U12 Branch Point Sequence:
AAATGCTTGATT
Flanking Amino Acid:
IRGLTKGGKETILTAEKIVI
Intron Amino Acid Position:
167

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84
0.8
0.9
69.2
38.5
Major BPS
70.2
0.5
1
72.1
33
Major PPT
88.5
0.87
0.7
84.9
29.9
Minor 5ss
38.8
-1.3
3
50.2
46.4
Minor BPS
57
0.3
1.8
70.8
40.3

Associated Gene:

Gene:
TXNRD2
Ensembl Gene ID:
ENSAPLG00000002411
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017269
4532425 - 4566194
33770