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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_4561045_4573185_F

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
4561045 - 4573185
Intron Length:
12141

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTACA
5'SS Class:
strong_major
3'SS Sequence:
TCTATTTTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTAAT
U12 Branch Point Sequence:
CTAGTCTTAATT
Flanking Amino Acid:
EVIQGFALGIKTIKQVWEKE
Intron Amino Acid Position:
491

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.9
0.87
0.9
83.5
27.8
Major BPS
87
0.92
0.9
86.2
29.1
Major PPT
87.9
0.85
0.8
80.4
37.1
Minor 5ss
37.7
-1.4
2.7
44.2
37
Minor BPS
66.8
0.61
1.4
75.74
41.7

Associated Gene:

Gene:
TXNRD2
Ensembl Gene ID:
ENSAPLG00000002411
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002443
4532425 - 4573376
40952