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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_4610903_4612644_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
4610903 - 4612644
Intron Length:
1742

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGACCTCT
5'SS Class:
major
3'SS Sequence:
CTTGCTCCCCCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTGTAAT
U12 Branch Point Sequence:
CCCTCTGTAATA
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.6
0.53
1.2
68.4
39.3
Major BPS
72.1
0.55
1.2
73.3
39.1
Major PPT
74.6
0.55
0.8
65.8
36
Minor 5ss
46.6
-0.3
2.8
65.7
45.4
Minor BPS
49.2
-0
2
57.68
43.3

Associated Gene:

Gene:
GNB1L
Ensembl Gene ID:
ENSAPLG00000002318
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002353
4610504 - 4629440
18937