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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_4612773_4613013_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
4612773 - 4613013
Intron Length:
241

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
TTATTACTGCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATTAC
U12 Branch Point Sequence:
ATATCTGTTATT
Flanking Amino Acid:
QEPDVPVLFSGSENGLINVW
Intron Amino Acid Position:
39

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.2
0.9
0.9
83.2
30.8
Major BPS
74.8
0.62
1.1
66
40.5
Major PPT
73.2
0.52
1
66.9
43.9
Minor 5ss
34.6
-1.8
2.7
34
41.5
Minor BPS
47.8
-0
2.2
70.49
41.3

Associated Gene:

Gene:
GNB1L
Ensembl Gene ID:
ENSAPLG00000002318
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002353
4610504 - 4629440
18937