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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_4615308_4619096_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4615308 - 4619096
Intron Length:
3789

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGGAAAT
5'SS Class:
strong_major
3'SS Sequence:
TTCCTGATGTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTGAT
U12 Branch Point Sequence:
TTTTCCTGATGT
Flanking Amino Acid:
MAMAAKALDEVQVLELPSKT
Intron Amino Acid Position:
136

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84
0.8
0.9
80.7
33.7
Major BPS
78.8
0.71
1
67.6
40.6
Major PPT
70.4
0.46
1
69.6
40.4
Minor 5ss
33.7
-1.9
3.3
48
47.7
Minor BPS
60.5
0.41
2
84.91
41.5

Associated Gene:

Gene:
GNB1L
Ensembl Gene ID:
ENSAPLG00000002318
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002353
4610504 - 4629440
18937