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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_4619196_4624016_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4619196 - 4624016
Intron Length:
4821

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGCAA
5'SS Class:
strong_major
3'SS Sequence:
TTCTCTTTATCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAA
U12 Branch Point Sequence:
TTCTCTTTATCA
Flanking Amino Acid:
GMPMCLKLWQINCGSQPLLL
Intron Amino Acid Position:
169

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.8
0.92
0.9
74.9
37
Major BPS
90.8
1.01
0.7
91.9
19.6
Major PPT
84.6
0.78
0.8
85.2
27.9
Minor 5ss
30.1
-2.3
3.2
37.9
46.9
Minor BPS
70.8
0.65
1.6
78.76
38.3

Associated Gene:

Gene:
GNB1L
Ensembl Gene ID:
ENSAPLG00000002318
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002353
4610504 - 4629440
18937