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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_4624233_4629099_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4624233 - 4629099
Intron Length:
4867

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTCAGCATC
5'SS Class:
major
3'SS Sequence:
CTTTCTCACACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TCATCTATAACT
Flanking Amino Acid:
WSLNEQQNLQVHTTHRLVNA
Intron Amino Acid Position:
241

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.8
0.63
1.3
76.2
39.9
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
77.6
0.62
0.8
72.8
31
Minor 5ss
39.4
-1.2
2.9
52.1
44.7
Minor BPS
67.8
0.64
1.6
81.68
39.8

Associated Gene:

Gene:
GNB1L
Ensembl Gene ID:
ENSAPLG00000002318
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002353
4610504 - 4629440
18937