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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_4646456_4646650_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4646456 - 4646650
Intron Length:
195

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTAAGTGTT
5'SS Class:
strong_major
3'SS Sequence:
TTTTATCATTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATCAT
U12 Branch Point Sequence:
GTTTTATCATTC
Flanking Amino Acid:
TNNLLDDNGHIILNSMHRYQ
Intron Amino Acid Position:
429

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.4
0.86
0.9
87.3
27
Major BPS
88.2
0.95
0.9
88.3
28.5
Major PPT
84
0.76
0.9
82.3
34.2
Minor 5ss
41.1
-1
3.4
62.8
42
Minor BPS
45.9
-0.3
2
60.23
39.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023700
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042653
4642897 - 4655704
12808
ENSAPLT00000021102
4642897 - 4651739
8843