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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_46733_46930_R

Intron Information:

Intron Rank:
22
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
46733 - 46930
Intron Length:
198

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGGCTA
5'SS Class:
strong_major
3'SS Sequence:
TTCCTGTTCTAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CATTCAA
U12 Branch Point Sequence:
CTTCATTCAAGT
Flanking Amino Acid:
IVETTKLYMRGVSAVEPEWI
Intron Amino Acid Position:
984

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.7
0.84
0.9
74.8
37
Major BPS
70.6
0.51
1
73.3
31.3
Major PPT
70
0.45
1
74.4
34.1
Minor 5ss
28.9
-2.4
3.3
37.9
46.9
Minor BPS
46.5
-0.1
2
66.41
44.2

Associated Gene:

Gene:
DHX37
Ensembl Gene ID:
ENSAPLG00000009562
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010012
43730 - 60314
16585