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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_47606_47728_R

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
47606 - 47728
Intron Length:
123

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAATGAG
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCCCTGTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTAAC
U12 Branch Point Sequence:
TGAGTTGTAACT
Flanking Amino Acid:
RRLRGQLTTAVNSVCADTGL
Intron Amino Acid Position:
888

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.4
0.83
0.9
74.7
35.6
Major BPS
74.5
0.61
1.1
75.6
36.6
Major PPT
86.4
0.82
0.6
82.4
22.2
Minor 5ss
31.4
-2.1
3.2
39.6
46.4
Minor BPS
48.7
-0
2.1
68.47
42.8

Associated Gene:

Gene:
DHX37
Ensembl Gene ID:
ENSAPLG00000009562
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010012
43730 - 60314
16585