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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_4812970_4814183_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4812970 - 4814183
Intron Length:
1214

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGCACG
5'SS Class:
strong_major
3'SS Sequence:
TTTTGCTTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTGACAT
U12 Branch Point Sequence:
GGTGTGACATCC
Flanking Amino Acid:
GRLYPWGIVEVENQAHCDFV
Intron Amino Acid Position:
272

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.8
0.92
0.9
75.3
40.8
Major BPS
49.9
-0
1.4
60.7
45.9
Major PPT
89.9
0.9
0.7
84.7
30.1
Minor 5ss
39.7
-1.2
2.8
49.5
46.5
Minor BPS
32.2
-1.3
2.2
40.5
39

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016224
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031853
4809377 - 4822673
13297
ENSAPLT00000016943
4810297 - 4849446
39150
ENSAPLT00000011550
4809377 - 4849001
39625