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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_4815275_4815598_R

Intron Information:

Intron Rank:
7
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
4815275 - 4815598
Intron Length:
324

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTGAGATGC
5'SS Class:
major
3'SS Sequence:
TGCATGGACGCAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
CTTGCAT
U12 Branch Point Sequence:
TTGTCTTGCATG
Flanking Amino Acid:
PSEIRKLKERIREEIEKFGI
Intron Amino Acid Position:
206

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.2
0.62
1
62.9
38.7
Major BPS
62.7
0.32
1.4
75
39.9
Major PPT
57
0.16
1.1
49.9
42.9
Minor 5ss
32.4
-2
3
33.5
42
Minor BPS
48.7
-0.2
2
59.51
43.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016224
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016943
4810297 - 4849446
39150
ENSAPLT00000011550
4809377 - 4849001
39625
ENSAPLT00000031853
4809377 - 4822673
13297