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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_4816521_4816688_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
4816521 - 4816688
Intron Length:
168

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTGAGCAGG
5'SS Class:
major
3'SS Sequence:
TTCTCCTTCCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
TTGGTTTTGATC
Flanking Amino Acid:
GFGDAVNNTECWKPITDYID
Intron Amino Acid Position:
121

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.9
0.61
1
61.4
44.7
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
83.7
0.76
0.7
76.5
32.1
Minor 5ss
33.5
-1.9
2.8
36.6
41.8
Minor BPS
56.3
0.18
1.3
63.72
37.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016224
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031853
4809377 - 4822673
13297
ENSAPLT00000016943
4810297 - 4849446
39150
ENSAPLT00000011550
4809377 - 4849001
39625