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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_4816813_4817373_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4816813 - 4817373
Intron Length:
561

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGTTGG
5'SS Class:
strong_major
3'SS Sequence:
TATTCCTGTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACTCAT
U12 Branch Point Sequence:
CTGGCCTTAACT
Flanking Amino Acid:
YKDRKLLNAEERINQTVEIV
Intron Amino Acid Position:
80

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.4
0.81
1
69.7
43.7
Major BPS
78.3
0.7
0.8
77.7
26.1
Major PPT
79.5
0.66
0.9
77.5
36.4
Minor 5ss
39.2
-1.2
2.8
41
45.3
Minor BPS
75.6
0.88
1.4
83.45
43.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016224
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016943
4810297 - 4849446
39150
ENSAPLT00000011550
4809377 - 4849001
39625
ENSAPLT00000031853
4809377 - 4822673
13297