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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_4866359_4867364_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
4866359 - 4867364
Intron Length:
1006

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTATG
5'SS Class:
strong_major
3'SS Sequence:
TTTTGTCCAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATGCAT
U12 Branch Point Sequence:
TTTTGTCCAACA
Flanking Amino Acid:
FRSERLKRTGKPVEEEVVDK
Intron Amino Acid Position:
308

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.3
0.88
0.9
84.6
33.2
Major BPS
58.4
0.21
1.3
69.4
37.7
Major PPT
78.7
0.65
0.9
74.4
35.3
Minor 5ss
41.1
-1
2.8
51.8
38.9
Minor BPS
48.8
-0
2.2
72.2
40

Associated Gene:

Gene:
CDC45
Ensembl Gene ID:
ENSAPLG00000016068
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038040
4851398 - 4882450
31053
ENSAPLT00000017926
4851398 - 4882450
31053
ENSAPLT00000016772
4851398 - 4883431
32034