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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_4869520_4874555_R

Intron Information:

Intron Rank:
6
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
4869520 - 4874555
Intron Length:
5036

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGA|GTAGGTCTA
5'SS Class:
major
3'SS Sequence:
GTAAACTCCCTAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTATTAT
U12 Branch Point Sequence:
TTTTTGTAAACT
Flanking Amino Acid:
LKERERLKRRVLDEISEHGI
Intron Amino Acid Position:
198

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
66.5
0.39
1.1
62.6
43.8
Major BPS
84.7
0.86
1
74.3
40.7
Major PPT
57.9
0.18
0.9
47.8
41
Minor 5ss
37.7
-1.4
3.3
45.7
43.6
Minor BPS
59.7
0.38
2.3
86.99
39.2

Associated Gene:

Gene:
CDC45
Ensembl Gene ID:
ENSAPLG00000016068
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038040
4851398 - 4882450
31053
ENSAPLT00000017926
4851398 - 4882450
31053
ENSAPLT00000016772
4851398 - 4883431
32034