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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_4874674_4875126_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
4874674 - 4875126
Intron Length:
453

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGAAAA
5'SS Class:
strong_major
3'SS Sequence:
CACTTGTTGGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TTTTTTTTCACT
Flanking Amino Acid:
CFYFISPFGHGLKPLDVEFM
Intron Amino Acid Position:
158

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.3
0.78
1
76.9
33.7
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
68.7
0.42
1.1
64.5
41.1
Minor 5ss
32.3
-2
2.9
32.2
42.1
Minor BPS
72.2
0.78
1.7
90.89
33.1

Associated Gene:

Gene:
CDC45
Ensembl Gene ID:
ENSAPLG00000016068
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038040
4851398 - 4882450
31053
ENSAPLT00000017926
4851398 - 4882450
31053
ENSAPLT00000016772
4851398 - 4883431
32034