About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_4875262_4879815_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
4875262 - 4879815
Intron Length:
4554

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTATGTGTG
5'SS Class:
strong_major
3'SS Sequence:
TTCCATACCACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTAAGAT
U12 Branch Point Sequence:
CCTTCCATACCA
Flanking Amino Acid:
GYGDAINSQDCFKTIIQYID
Intron Amino Acid Position:
113

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80
0.71
1
70.6
39.7
Major BPS
67.4
0.43
1.1
63.4
42.8
Major PPT
71.9
0.49
0.9
65.5
34.5
Minor 5ss
42.5
-0.8
3.1
54.1
44.6
Minor BPS
54.6
0.14
2
67.8
44.7

Associated Gene:

Gene:
CDC45
Ensembl Gene ID:
ENSAPLG00000016068
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038040
4851398 - 4882450
31053
ENSAPLT00000017926
4851398 - 4882450
31053
ENSAPLT00000016772
4851398 - 4883431
32034