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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_48787_49441_R

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
48787 - 49441
Intron Length:
655

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATGTCT
5'SS Class:
strong_major
3'SS Sequence:
ACTCTTCCCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
TTGTTTTTTACT
Flanking Amino Acid:
GALKEPPLTGRLKEQQAAKL
Intron Amino Acid Position:
744

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.7
0.72
1
75
35.5
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
75.3
0.57
0.8
69
30.9
Minor 5ss
39.4
-1.2
3.3
57.2
47
Minor BPS
67
0.62
1.6
82.93
38.6

Associated Gene:

Gene:
DHX37
Ensembl Gene ID:
ENSAPLG00000009562
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010012
43730 - 60314
16585