About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_4879940_4882122_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4879940 - 4882122
Intron Length:
2183

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGTCAC
5'SS Class:
strong_major
3'SS Sequence:
TCCTTTATTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTAAA
U12 Branch Point Sequence:
TGTTCCTTTATT
Flanking Amino Acid:
KGFEFTLMVVEKIERTVQIE
Intron Amino Acid Position:
110

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.8
0.87
0.9
74.1
36.5
Major BPS
73.8
0.59
0.9
74
26.8
Major PPT
82.2
0.72
0.7
81.3
29.1
Minor 5ss
34.7
-1.7
2.9
41.5
39.2
Minor BPS
75.7
0.89
1.5
89.03
35.4

Associated Gene:

Gene:
CDC45
Ensembl Gene ID:
ENSAPLG00000016068
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017926
4851398 - 4882450
31053