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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_4883432_4922592_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4883432 - 4922592
Intron Length:
39161

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTGAGTAAT
5'SS Class:
strong_major
3'SS Sequence:
TTTTATTTTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
GTACTCTGAATT
Flanking Amino Acid:
RTLHNHFDMSMSETWSDETC
Intron Amino Acid Position:
531

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.3
0.81
0.8
85.9
23.8
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
92
0.95
0.7
84.8
35.4
Minor 5ss
33.7
-1.9
2.8
42.6
38.4
Minor BPS
59.1
0.36
1.4
72.06
38.4

Associated Gene:

Gene:
CDC45
Ensembl Gene ID:
ENSAPLG00000016068
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016341
4883382 - 4932419
49038