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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_4920795_4921991_R

Intron Information:

Intron Rank:
18
Intron Class:
major
Intron Phase:
3UTR
Intron Coordinates:
4920795 - 4921991
Intron Length:
1197

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTAAGATAG
5'SS Class:
strong_major
3'SS Sequence:
CCTTGTCATGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
CATTTCATATTG
Flanking Amino Acid:
3UTR
Intron Amino Acid Position:
3UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.4
0.74
1
69
38.5
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
75.3
0.57
0.9
69.4
35.9
Minor 5ss
37.8
-1.4
3.1
48.2
47.3
Minor BPS
46.7
-0.3
1.9
52.69
42.5

Associated Gene:

Gene:
CDC45
Ensembl Gene ID:
ENSAPLG00000016068
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032033
4919660 - 4934298
14639