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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_4922059_4922592_R

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
4922059 - 4922592
Intron Length:
534

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTGAGTAAT
5'SS Class:
strong_major
3'SS Sequence:
TTTCATGTTTTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
TGTTATTGAATC
Flanking Amino Acid:
RTLHNHFDMSIIELKTEDRS
Intron Amino Acid Position:
546

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.3
0.81
0.8
85.9
23.8
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
79.3
0.66
0.9
77.4
36.6
Minor 5ss
33.7
-1.9
2.8
42.6
38.4
Minor BPS
57.9
0.23
1.6
69.09
36.1

Associated Gene:

Gene:
CDC45
Ensembl Gene ID:
ENSAPLG00000016068
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032033
4919660 - 4934298
14639