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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_4922670_4923455_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
4922670 - 4923455
Intron Length:
786

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAGGATC
5'SS Class:
strong_major
3'SS Sequence:
TGTTCATCTTTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTCAT
U12 Branch Point Sequence:
ATATGATTAATT
Flanking Amino Acid:
PPETESSDKKNFFGRAFEKA
Intron Amino Acid Position:
505

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.75
0.9
79.7
33.7
Major BPS
83.4
0.83
0.8
83.7
25.7
Major PPT
77.4
0.62
0.8
74.9
35
Minor 5ss
38.5
-1.3
3.3
52.3
38.8
Minor BPS
56.5
0.28
2
76.58
39.9

Associated Gene:

Gene:
CDC45
Ensembl Gene ID:
ENSAPLG00000016068
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032033
4919660 - 4934298
14639
ENSAPLT00000016341
4883382 - 4932419
49038