Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_4923575_4924713_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

4923575 - 4924713

Intron Length:

1139

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TCT|GTAAGTAAA

5'SS Class:

major

3'SS Sequence:

TTCTGTCTTCCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

GTCTGAC

U12 Branch Point Sequence:

TTTGGTCTGACA

Flanking Amino Acid:

KYLLKSFVCSTKNKRCKLLP

Intron Amino Acid Position:

466

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

76.6

0.63

1.1

76.6

33.9

Major BPS

63.7

0.34

1.2

41.8

Major PPT

85.1

0.79

0.8

76.9

37.4

Minor 5ss

-1.4

2.8

52.2

44.4

Minor BPS

-0.2

2.2

66.57

40.3

Associated Gene:

Gene:

CDC45

Ensembl Gene ID:

ENSAPLG00000016068

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000032033

4919660 - 4934298

14639

ENSAPLT00000016341

4883382 - 4932419

49038