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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_4927067_4927825_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
4927067 - 4927825
Intron Length:
759

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCA|GTAAGAAAG
5'SS Class:
major
3'SS Sequence:
GTTTTTGTTAAAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTGAA
U12 Branch Point Sequence:
TTTTTGTTAAAG
Flanking Amino Acid:
TDQWVQDKITQMKYVTDIGI
Intron Amino Acid Position:
220

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72
0.52
1.1
65.7
40
Major BPS
74.4
0.61
0.9
63.6
35.5
Major PPT
74
0.54
1.1
74.5
39.3
Minor 5ss
35
-1.7
3
46.2
42.8
Minor BPS
58.7
0.14
2.2
72.05
40.8

Associated Gene:

Gene:
CDC45
Ensembl Gene ID:
ENSAPLG00000016068
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032033
4919660 - 4934298
14639
ENSAPLT00000016341
4883382 - 4932419
49038