Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_4929889_4930906_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

4929889 - 4930906

Intron Length:

1018

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTTCGTTTC

5'SS Class:

major

3'SS Sequence:

ACTTAATTTGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTAAC

U12 Branch Point Sequence:

TCTAACTTAATT

Flanking Amino Acid:

PSDKRRRFEEEVIERTMKRR

Intron Amino Acid Position:

148

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

75.7

0.61

1.2

74.5

36.8

Major BPS

89.7

0.98

0.7

89.9

Major PPT

77.4

0.62

0.9

70.2

39.4

Minor 5ss

-1.1

53.4

43.8

Minor BPS

0.68

1.5

81.74

39.8

Associated Gene:

Gene:

CDC45

Ensembl Gene ID:

ENSAPLG00000016068

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000032033

4919660 - 4934298

14639

ENSAPLT00000016341

4883382 - 4932419

49038