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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_4932748_4933707_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4932748 - 4933707
Intron Length:
960

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGCGGCCC
5'SS Class:
major
3'SS Sequence:
ATTATTTTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTAAT
U12 Branch Point Sequence:
ATATTGTTAATA
Flanking Amino Acid:
RDFYERIVSQRVLLLVASDV
Intron Amino Acid Position:
18

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.6
0.56
1
57.6
41.5
Major BPS
84.4
0.85
1
84
34.5
Major PPT
86.5
0.82
0.8
81.2
35.6
Minor 5ss
25.5
-2.8
3.2
33.6
41.9
Minor BPS
58.1
0.25
2
69.94
36.6

Associated Gene:

Gene:
CDC45
Ensembl Gene ID:
ENSAPLG00000016068
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032033
4919660 - 4934298
14639