Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_4937083_4937492_F

Intron Information:

Intron Rank:

Intron Class:

minor

Intron Phase:

Intron Coordinates:

4937083 - 4937492

Intron Length:

410

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TGT|GTATCCTTT

5'SS Class:

strong_minor

3'SS Sequence:

ACATACTCCAAAG|A

3'SS Class:

minor_BPS

U2 Branch Point Sequence:

AATTCAT

U12 Branch Point Sequence:

TTCATCTTAACA

Flanking Amino Acid:

DFLDITNPKAVLENALRNFA

Intron Amino Acid Position:

136

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

49.6

-0

1.3

55.3

44.3

Major BPS

83.4

0.83

0.8

83.7

25.7

Major PPT

54.2

0.1

1.1

52.6

Minor 5ss

96.7

1.57

0.7

90.9

28.7

Minor BPS

0.81

1.2

79.58

36.6

Associated Gene:

Gene:

UFD1

Ensembl Gene ID:

ENSAPLG00000003494

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000023502

4934699 - 4941099

6401

ENSAPLT00000003594

4934699 - 4941099

6401