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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_4937566_4938236_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4937566 - 4938236
Intron Length:
671

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATAACAT
5'SS Class:
major
3'SS Sequence:
ATAATTGTTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTTATCATAATT
Flanking Amino Acid:
DVIAINYNEKIYELRVMETK
Intron Amino Acid Position:
161

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.6
0.56
1
66.7
38.5
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
73.8
0.53
1
70
44.9
Minor 5ss
39.1
-1.2
3.2
56
48.1
Minor BPS
66.7
0.6
1.6
85.4
34.6

Associated Gene:

Gene:
UFD1
Ensembl Gene ID:
ENSAPLG00000003494
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023502
4934699 - 4941099
6401
ENSAPLT00000003594
4934699 - 4941099
6401