About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_4938306_4938855_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4938306 - 4938855
Intron Length:
550

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTAAGTTAA
5'SS Class:
strong_major
3'SS Sequence:
CCTACTTAAATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TCCTACTTAAAT
Flanking Amino Acid:
AVSIIECDMNVDFDAPLGYK
Intron Amino Acid Position:
184

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.1
0.83
1
82.3
25.5
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
62.2
0.28
1
58.4
36.1
Minor 5ss
41.9
-0.9
2.8
53.7
43.8
Minor BPS
65.6
0.57
1.7
78.16
43.8

Associated Gene:

Gene:
UFD1
Ensembl Gene ID:
ENSAPLG00000003494
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023502
4934699 - 4941099
6401
ENSAPLT00000003594
4934699 - 4941099
6401