About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_4939724_4940463_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
4939724 - 4940463
Intron Length:
740

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGTTTT
5'SS Class:
strong_major
3'SS Sequence:
GCTGCTTTTCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TCTTTCATAATG
Flanking Amino Acid:
PSPIKPGDIRRGIPNYDFKI
Intron Amino Acid Position:
251

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.1
0.97
0.8
89.6
24.2
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
78.2
0.63
0.9
68.7
42
Minor 5ss
57.8
0.27
2.3
75.5
40.6
Minor BPS
62.2
0.25
1.7
67.5
40.7

Associated Gene:

Gene:
UFD1
Ensembl Gene ID:
ENSAPLG00000003494
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023502
4934699 - 4941099
6401
ENSAPLT00000003594
4934699 - 4941099
6401