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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_4942200_4942302_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
4942200 - 4942302
Intron Length:
103

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACCGCCC
5'SS Class:
major
3'SS Sequence:
GTGCCTCTTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GGCCCAG
U12 Branch Point Sequence:
CTGTTTGTGCCT
Flanking Amino Acid:
WESARAAAAQEALCKSERAR
Intron Amino Acid Position:
65

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
64.3
0.34
1.3
54
41.7
Major BPS
36.4
-0.8
1.6
37.9
43.6
Major PPT
76.1
0.59
0.9
69.4
36.8
Minor 5ss
36.5
-1.5
3.5
51.8
44.9
Minor BPS
35.1
-1
3.6
60.97
44.1

Associated Gene:

Gene:
C22orf39
Ensembl Gene ID:
ENSAPLG00000000942
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000000921
4941919 - 4942428
510