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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_16_4944465_4945612_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
4944465 - 4945612
Intron Length:
1148

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGTGCA
5'SS Class:
strong_major
3'SS Sequence:
TTTATCTCACCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
AATTATTTATCT
Flanking Amino Acid:
LLAFRASLPVRAQPKKKKKV
Intron Amino Acid Position:
177

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.3
0.97
0.7
80.2
27.1
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
77.8
0.63
0.9
71.3
39.4
Minor 5ss
27.5
-2.6
3
32.5
42.3
Minor BPS
58.9
0.36
1.8
76.69
39.6

Associated Gene:

Gene:
MRPL40
Ensembl Gene ID:
ENSAPLG00000004002
Chromosome:
16

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004092
4943417 - 4946895
3479